MHD Filtering Wrapper API

filter_nrrd_gpu(
    param_path::Dict, path_dir_nrrd::String, t_range, list_ch,
    f_basename::Function; nrrd_filt_dir_key::String="path_dir_nrrd_filt", 
    mip_filt_dir_key::String="path_dir_MIP_filt", vmax=1600
)

Runs total variation filtering on a set of images.

Arguments

• param_path::Dict: Dictionary of locations of data
• path_dir_nrrd::String: Location of NRRD files to filter
• t_range: Time points to filter
• list_ch: Channels to filter
• f_basename::Function: Function that returns NRRD filename given time point and channel
• nrrd_filt_dir_key::String (optional): Key in param_path that maps to the location to store

the output NRRD files. Default path_dir_nrrd_filt

• mip_filt_dir_key::String (optional): Key in param_path that maps to the location to store

the output MIP files. Default path_dir_MIP_filt

• vmax: Contrast setting for png files